Erik van Nimwegen: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

1

A meta-analysis of the cognitive and motivational effects of serious games.

Wouters, Pieter, van Nimwegen, Christof, van Oostendorp, Herre, van der Spek, Erik D.

Journal:

Journal of Educational Psychology

Year:

2013

Language:

english

File:

PDF, 200 KB

english, 2013

2

Metastable Evolutionary Dynamics: Crossing Fitness Barriers or Escaping via Neutral Paths?

Erik van Nimwegen, James P. Crutchfield

Journal:

Bulletin of Mathematical Biology

Year:

2000

Language:

english

File:

PDF, 562 KB

english, 2000

3

Photoconductive response of polycrystalline Cu0.5Ag0.5InSe2thin films

Erik Van Nimwegen, James P. Crutchfield

Journal:

Journal of Materials Science: Materials in Electronics

Year:

2001

Language:

english

File:

PDF, 391 KB

english, 2001

4

Statistical Dynamics of the Royal Road Genetic Algorithm

Erik van Nimwegen, James P. Crutchfield, Melanie Mitchell

Journal:

Theoretical Computer Science

Year:

1999

Language:

english

File:

PDF, 635 KB

english, 1999

5

Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria

Galbusera, Luca, Bellement-Theroue, Gwendoline, Urchueguia, Arantxa, Julou, Thomas, van Nimwegen, Erik, Signore, Giovanni

Journal:

Year:

2020

File:

PDF, 3.44 MB

2020

6

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Suzuki, Harukazu, Forrest, Alistair R R, van Nimwegen, Erik, Daub, Carsten O, Balwierz, Piotr J, Irvine, Katharine M, Lassmann, Timo, Ravasi, Timothy, Hasegawa, Yuki, de Hoon, Michiel J L

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 980 KB

english, 2009

7

Optimizing Epochal Evolutionary Search: Population-Size Dependent Theory

Erik Van Nimwegen, James P. Crutchfield

Journal:

Machine Learning

Year:

2001

Language:

english

File:

PDF, 391 KB

english, 2001

8

Neutral Evolution of Mutational Robustness

Erik van Nimwegen, James P. Crutchfield and Martijn Huynen

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.17 MB

english, 1999

9

Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

Gruber, Andreas R., Martin, Georges, Müller, Philipp, Schmidt, Alexander, Gruber, Andreas J., Gumienny, Rafal, Mittal, Nitish, Jayachandran, Rajesh, Pieters, Jean, Keller, Walter, van Nimwegen, Erik,

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

10

PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny

Siddharthan, Rahul, Siggia, Eric D., van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 460 KB

english, 2005

11

The evolution of domain-content in bacterial genomes

Nacho Molina, Erik van Nimwegen

Journal:

Year:

2008

Language:

english

File:

PDF, 353 KB

english, 2008

12

Absence of Interleukin-17 Receptor A Signaling Prevents Autoimmune Inflammation of the Joint and Leads to a Th2-like Phenotype in Collagen-Induced Arthritis

Corneth, Odilia B. J., Mus, Adriana M. C., Asmawidjaja, Patrick S., Klein Wolterink, Roel G. J., van Nimwegen, Menno, Brem, Maarten D., Hofman, Yara, Hendriks, Rudi W., Lubberts, Erik

Journal:

Arthritis & Rheumatology

Year:

2014

Language:

english

File:

PDF, 479 KB

english, 2014

13

Quantifying the strength of miRNA–target interactions

Breda, Jeremie, Rzepiela, Andrzej J., Gumienny, Rafal, van Nimwegen, Erik, Zavolan, Mihaela

Journal:

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

14

Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability

ten Tusscher, Kirsten H., Hogeweg, Paulien, van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.92 MB

english, 2011

15

A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

Schertel, Claus, Albarca, Monica, Rockel-Bauer, Claudia, Kelley, Nicholas W., Bischof, Johannes, Hens, Korneel, van Nimwegen, Erik, Basler, Konrad, Deplancke, Bart

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 4.48 MB

english, 2015

16

A Simple Physical Model Predicts Small Exon Length Variations

Chern, Tzu-Ming, van Nimwegen, Erik, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Zavolan, Mihaela

Journal:

Year:

2006

Language:

english

File:

PDF, 374 KB

english, 2006

17

Crunch: Integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

Berger, Severin M, Pachkov, Mikhail, Arnold, Phil, Omidi, Saeed, Kelley, Nicholas, Salatino, Silvia, van Nimwegen, Erik

Journal:

Genome Research

Year:

2019

File:

PDF, 2.70 MB

2019

18

Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming

Tiwari, Neha, Tiwari, Vijay K., Waldmeier, Lorenz, Balwierz, Piotr J., Arnold, Phil, Pachkov, Mikhail, Meyer-Schaller, Nathalie, Schübeler, Dirk, van Nimwegen, Erik, Christofori, Gerhard

Journal:

Year:

2013

Language:

english

File:

PDF, 4.41 MB

english, 2013

19

Computational analysis of small RNA cloning data

Philipp Berninger, Dimos Gaidatzis, Erik van Nimwegen, Mihaela Zavolan

Journal:

Year:

2008

Language:

english

File:

PDF, 203 KB

english, 2008

20

An epigenetic profile of early T-cell development from multipotent progenitors to committed T-cell descendants

Vigano, Maria Alessandra, Ivanek, Robert, Balwierz, Piotr, Berninger, Philipp, van Nimwegen, Erik, Karjalainen, Klaus, Rolink, Antonius

Journal:

European Journal of Immunology

Year:

2014

Language:

english

File:

PDF, 3.02 MB

english, 2014

21

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method

Burger, Lukas, van Nimwegen, Erik

Journal:

Molecular Systems Biology

Year:

2008

Language:

english

File:

PDF, 336 KB

english, 2008

22

Inference of miRNA targets using evolutionary conservation and pathway analysis

Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 809 KB

english, 2007

23

Optimizing epochal evolutionary search: population-size independent theory

Erik van Nimwegen, James P. Crutchfield

Journal:

Computer Methods in Applied Mechanics and Engineering

Year:

2000

Language:

english

File:

PDF, 324 KB

english, 2000

24

Generation of Binary Tree-Child phylogenetic networks

Cardona, Gabriel, Pons, Joan Carles, Scornavacca, Celine, van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.18 MB

2019

25

Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8)

Tiwari, Neha, Meyer-Schaller, Nathalie, Arnold, Phil, Antoniadis, Helena, Pachkov, Mikhail, van Nimwegen, Erik, Christofori, Gerhard, Katz, Elad

Journal:

Year:

2013

Language:

english

File:

PDF, 1.83 MB

english, 2013

26

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates ofE. coli

Niels Hofsteenge, Erik van Nimwegen, Olin K Silander

Journal:

BMC Microbiology

Year:

2013

Language:

english

File:

PDF, 297 KB

english, 2013

27

Finite populations induce metastability in evolutionary search

Erik van Nimwegen, James P Crutchfield, Melanie Mitchell

Journal:

Physics Letters A

Year:

1997

Language:

english

File:

PDF, 729 KB

english, 1997

28

Scaling laws in functional genome content across prokaryotic clades and lifestyles

Nacho Molina, Erik van Nimwegen

Journal:

Trends in Genetics

Year:

2009

Language:

english

File:

PDF, 726 KB

english, 2009

29

Scaling laws in the functional content of genomes

Erik van Nimwegen

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 125 KB

english, 2003

30

Finding regulatory elements and regulatory motifs: a general probabilistic framework

Erik van Nimwegen

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 979 KB

english, 2007

31

Crunch: Integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

Berger, Severin M, Pachkov, Mikhail, Arnold, Phil, Omidi, Saeed, Kelley, Nicholas, Salatino, Silvia, van Nimwegen, Erik

Journal:

Genome Research

Year:

2019

Language:

english

File:

PDF, 2.70 MB

english, 2019

32

Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers

Ozonov, Evgeniy A., van Nimwegen, Erik, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

33

Corrigendum to “Quantifying the strength of miRNA–target interactions” [Methods (2015) 90–99]

Breda, Jeremie, Rzepiela, Andrzej J., Gumienny, Rafal, van Nimwegen, Erik, Zavolan, Mihaela

Journal:

Year:

2016

Language:

english

File:

PDF, 445 KB

english, 2016

34

The Genomic Context and Corecruitment of SP1 Affect ERRα Coactivation by PGC-1α in Muscle Cells

Salatino, Silvia, Kupr, Barbara, Baresic, Mario, van Nimwegen, Erik, Handschin, Christoph

Journal:

Molecular Endocrinology

Year:

2016

Language:

english

File:

PDF, 3.37 MB

english, 2016

35

Identification of clustered microRNAs using anab initioprediction method

Alain Sewer, Nicodème Paul, Pablo Landgraf, Alexei Aravin, Sébastien Pfeffer, Michael J Brownstein, Thomas Tuschl, Erik van Nimwegen, Mihaela Zavolan

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 518 KB

english, 2005

36

A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology

Vissers, Lisenka E.L.M., van Nimwegen, Kirsten J.M., Schieving, Jolanda H., Kamsteeg, Erik-Jan, Kleefstra, Tjitske, Yntema, Helger G., Pfundt, Rolph, van der Wilt, Gert Jan, Krabbenborg, Lotte, Brunne

Journal:

Genetics in Medicine

Year:

2017

Language:

english

File:

PDF, 588 KB

english, 2017

37

Trade-Offs and Constraints in Allosteric Sensing

Martins, Bruno M.C., Swain, Peter S., van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

38

Tead transcription factors differentially regulate cortical development

Mukhtar, Tanzila, Breda, Jeremie, Grison, Alice, Karimaddini, Zahra, Grobecker, Pascal, Iber, Dagmar, Beisel, Christian, van Nimwegen, Erik, Taylor, Verdon

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 9.78 MB

english, 2020

39

Co-expression of FBN1 with mesenchyme-specific genes in mouse cell lines: implications for phenotypic variability in Marfan syndrome

Summers, Kim M, Raza, Sobia, van Nimwegen, Erik, Freeman, Thomas C, Hume, David A

Journal:

European Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 369 KB

english, 2010

40

ARMADA: Using motif activity dynamics to infer gene regulatory networks from gene expression data

Pemberton-Ross, Peter J., Pachkov, Mikhail, van Nimwegen, Erik

Journal:

Year:

2015

Language:

english

File:

PDF, 2.06 MB

english, 2015

41

Dynamics of One-pass Germinal Center Models: Implications for Affinity Maturation

Mihaela Oprea, Erik van Nimwegen, Alan S. Perelson

Journal:

Bulletin of Mathematical Biology

Year:

2000

Language:

english

File:

PDF, 320 KB

english, 2000

42

SPA: A Probabilistic Algorithm for Spliced Alignment

van Nimwegen, Erik, Paul, Nicodeme, Sheridan, Robert, Zavolan, Mihaela

Journal:

Year:

2006

Language:

english

File:

PDF, 978 KB

english, 2006

43

On the role of extrinsic noise in microRNA-mediated bimodal gene expression

Del Giudice, Marco, Bo, Stefano, Grigolon, Silvia, Bosia, Carla, van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 10.59 MB

english, 2018

44

Transformation fingerprint: induced STAT3-C, v-Src and Ha-Ras cause small initial changes but similar established profiles in mRNA

Paz, Keren, Socci, Nicholas D, van Nimwegen, Erik, Viale, Agnes, Darnell, James E

Journal:

Year:

2004

Language:

english

File:

PDF, 229 KB

english, 2004

45

The types and prevalence of alternative splice forms [Current Opinion in Structural Biology 2006, 16:362–367]

Mihaela Zavolan, Erik van Nimwegen

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 89 KB

english, 2006

46

Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels

Tippmann, Sylvia C, Ivanek, Robert, Gaidatzis, Dimos, Schöler, Anne, Hoerner, Leslie, van Nimwegen, Erik, Stadler, Peter F, Stadler, Michael B, Schübeler, Dirk

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 387 KB

english, 2012

47

Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli

Brewster, Robert C., Jones, Daniel L., Phillips, Rob, van Nimwegen, Erik

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 851 KB

english, 2012

48

The Utrecht Score: A Novel Histopathological Scoring System to Assess the Prognosis of Dogs with Cortisol-Secreting Adrenocortical Tumours

Sanders, Karin, Cirkel, Koen, Grinwis, Guy C. M., Teske, Erik, van Nimwegen, Sebastiaan A., Mol, Jan A., Hesselink, Jan Willem, Kooistra, Hans S., Galac, Sara

Journal:

Veterinary and Comparative Oncology

Year:

2019

File:

PDF, 1.77 MB

2019

49

The types and prevalence of alternative splice forms

Mihaela Zavolan, Erik van Nimwegen

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 165 KB

english, 2006

50

Correction: Inference of miRNA targets using evolutionary conservation and pathway analysis

Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 139 KB

english, 2007

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@1delivery.pm

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски